Scaffold Ga0007865

Basic Information
Taxon OID	3300003796 Open in IMG/M
Scaffold ID	Ga0007865_1000018 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003796 Open in IMG/M

Scaffold ID

Ga0007865_1000018 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28926
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (86.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28926

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (86.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y
F044873	Metagenome	153	Y
F079523	Metagenome	115	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007865_100001818	F044873	N/A	MIIDKEVITLADIDEAIAHLSEMMKDRYRNRLTHQRKAFLMSELDSLLDARLEAISEQNNNSK*
Ga0007865_100001819	F079523	GAGG	MVEELWTSKQVIEHLEIEINNLRQLQFRKTLAWVKKEGKSVFYLADDVRAYKLKREVRKTVK*
Ga0007865_10000182	F080791	AGGAG	MATYQYNGDEVKEFPTLGLTVKPGDTXDSADEIISADVTLASAPKKTPTPSAAPDTTQGA
Ga0007865_10000183	F002722	AGGA	VAAGRANLRATLNSYLVGAAIPTLNQVFTSFPKRINFQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQVFHHSXQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA*
Ga0007865_100001840	F035995	GGAG	MSIVTPVQVEARLKDLSKLIDEAHDDLVDSEMLYHAAKATYEVAMAKSRIELAGKSDAGGRNRTVGEREDLALLANEERHMKVAECEAIVKANRANVARLRVQVDIARSIGTSVRTGMEA
Ga0007865_100001842	F020485	GGA	VKLFCKAKQHWEINNGKLILGAESDEFLAVQLAKMTARLEAEIRLDIYDQICALDLVKDRKRLVKLGIENVALLVQDACAQIAIGEYK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007865_1000018

Overview

Ecosystem & Geography

Associated Families

Sequences