Scaffold Ga0007811_1004273

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1004273
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026556	Metagenome / Metatranscriptome	197	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_10042733	F026556	GGAGG	MTSALLKLVVGIIFIVIAVIFGPIVGIWSLNTLFPVLNIPFTWQTWLAFNCLFGGSIATRFKK*
Ga0007811_10042735	F070810	GAG	LNKQKDMEIVNSVYEIRIDWKLSQDTNKWWNAVCADIMEVFGLPGERYTSHPYHDCMLFRFKSKKDYHLCKILVSDKI*
Ga0007811_10042736	F063276	AGGA	MQNSSFRQNLDFVLALLISIGAFVFVIWWNIENPHLTVRYDCSIAEISPDYPIAVKEGCRKLRAENILQKPK*