Scaffold Ga0007811_1000658

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1000658
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5238
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053079	Metagenome / Metatranscriptome	141	Y
F058734	Metagenome / Metatranscriptome	134	Y
F079412	Metagenome	115	N
F091108	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_10006581	F058734	N/A	IIGNINEFTASEQKTLYSDGADMTTGMYYLVADAKDFVTQGREVIPNLPALRSLTASANISWIITNYRGNRVAFGSASA*
Ga0007811_10006582	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPAGYHQLNTLEEAKNFLHKYVAYIREVWDKQVLDGRK*
Ga0007811_10006586	F079412	N/A	MINWDTLSLVYSAILDPVYKAKKKRNFVIRIRGVKHGTWNWYSYNSDGAYFVIALKLRIGQFHRVIIHEFRHFIQDKILHVPMTADYEKMYYRHPLEVDARYFENKGLHFARRLYNRIEKQKKTFAILNEYRPKGEKTNRNGNTSRSKLRSKGKGSK*
Ga0007811_10006587	F053079	N/A	MGILPDPNYVPREKVANRFGVMVWDHKTAGTCQVMTGDSFKQAKQYMARPGHRSGIQKLGYRG*