Scaffold Ga0007811

Basic Information
Taxon OID	3300003787 Open in IMG/M
Scaffold ID	Ga0007811_1000197 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003787 Open in IMG/M

Scaffold ID

Ga0007811_1000197 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9065
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9065

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (80.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F029972	Metagenome	186	Y
F052345	Metagenome	142	Y
F102399	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100019710	F029972	GAG	MGKFQQKFSQRQERELEEQWPMAKRTIGSGAKWEKADLQTQEYQNIEFMIECKSTQSSSFSITKTIWNTVKSHAQNKSWLSRPVLAVRLYGPTIEMTEWGERENTPETLPVELDLIVIDKDDFLELYEDYIRLKENE*
Ga0007811_10001974	F052345	GAGG	MDRRTKEYKELVHMTPTTQELLSEEIDGELYLYKYSPQCKICNTSEDLRNIIDSLLLFPKTYKEVLQSIQSLQDKLGIVGDDRINYENIRNHQKRHLPFDKAMVRETVERRAREKNRSILDTSERLLTAEAFYEVIVAKGWEEIAKGHTQPTLNQTMEAMERLQKLEKEGQEDYRPEELINQLDIILMAVREVLPPDMKEALFRKIEEFQTADKKHKNPQALREADIDIDDYVDEDLLEEDL*
Ga0007811_10001976	F021233	N/A	MNNNRSLRKGLSGLTEPELGMEHNDKFNELHSFAVRAFDWKDRPEEKEMLDSIEVLVEKFLYDYLNPAEVIIAKFNTDANMGEVEAERLFLNLQSTIVSIEEEVTRRYLKAQFSYYMLDDKYWENYRKGNGTTNDLTARARMETRDDRYFYFVQYAAWRIINDKVQSLKATQRHIQNKIYRSGYRT*
Ga0007811_10001978	F102399	GAG	VSFLERTLATYQNNEPITPHIEEALIHADWPEEYPVKVFNKERKFDNMYHPSSDVTAGELQLYYKFHPELRLQCQEERISPTLQMTFQVGSAFHSIIQSMLIHLGFTTMEEVEVKFKNEERMCAGAVDILKLQTPDGEQFLVDIKSCNQLPKEASYQYQMQLRTYQDNCPGAPDRMALLFIQKSYPHKIKTIEVFKDQNELDKLYDKWDRVRVAIRNNDTTGLKHCCNGPTDEVFLSCPARKICEYWNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007811_1000197

Overview

Ecosystem & Geography

Associated Families

Sequences