Scaffold Ga0007811_1000097

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1000097
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12784
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans pelophilum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100009710	F055388	N/A	MAQNGVTFSSCQDVDTLFREARVYYNPFFIKKMAIXXXXXGRLETXTWPXNTLPTQKAFRFGRGWYNPDQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMNTNVNITKNVHEEFARSNWIGGAGHKWVPVSNGQSLVSCVTPDDQMFIVQPFEGTNEGSYNMGYVYVKMPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDSRVLRQLWQYAKQSSGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRFNVDWTYNASLPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYVQNTAYNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI*
Ga0007811_10000973	F048735	N/A	MEYNGLVLDAPKDTTYGIPYLETVPQFVRELSCYALTRGEFGRIQRIKRGIRIEDTDLKNPAQHMVNCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVMDWISAPTVTSTYVASTSLDASEDRLWGKVCTLYRTAMRNIQTQYKTATIGNLVEYRRMIVFESIDTRDTERDYTNAIKAVAFPKGGEGQKAVDNMRGRKNERVRVFLDELAEMDLYCLNVRSNFTAGNDDVLFGGMANPSNTANNPHTELCEPDDPMGWESVNRYTKRWKTRTGVALHLSGEESPNLQAPDAEIPPFKNFLTYKKMEATLKICYGNKNALEYWRNVYGWWPDNSVELTILSKAFIAGCDLNFEPVWSGRTRVVCGFDPAFTAGGDRCAASFCRLGQNDTGRNVGFYLGTREYESSVGDVFEESIAIQLVKDCIEFGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTERRISNLDKRTCKEAYDRLVTEYWFAVHTAFSTRSLVGIDVDAHSKVVNELCSRLYYHKGRKVAVEKKLDMKHRLKKSPDLADSLTYAVQMLRRAGLEFAFEEETVSLDIQEISDWENRLIHSKGTTQEKIEDDEWGYGGKGTDDDGF*
Ga0007811_10000974	F030662	N/A	MRLKDKNGPIPSGLWYEXSDDKGTKYRVNGMEMTYGRQFSXKVASDMKNNNVEVPDNLDYLIEQQICGRIPGQYCWQEAGDKVANVIHTFASLGDRVAATLGVQTNLEQAAKGCTACQKRRQAMNQTLG*