Scaffold Ga0007851

Basic Information
Taxon OID	3300003785 Open in IMG/M
Scaffold ID	Ga0007851_100336 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003785 Open in IMG/M

Scaffold ID

Ga0007851_100336 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3733
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3733

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023848	Metagenome	208	Y
F074449	Metagenome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0007851_1003361	F074449	GGA	MKVSDLTKKSTTYSAIIQQMMNYQYAYLGGYIFKQQVRKKRPSEDSVLWNDLITNTVAQPICRYVVDTINDILFETGVKRDIRFATPQGTIINPDNSEWADLFTMDIDLQNRDIDSFMEQVGDLTSIFGHCWIAVDMPQTAQGNLGRPYTCAISPIDVWDWEWEYYGGKPILKYVKVKEMEDVDYFYLKCYYLGDANTPSHWASYKLPKMSLSGQLDNEAECIGAGQFPAGMSIPLFIAFGRKDPRVIDLGVSDIDAASDAMREHYKLECEAYTALQFAHTIIRAEKGIAIPVHAGAIVRALKDQVEAIKIDTGDVEQIIKKQNDILSNLEGLVGMGGQRQDKQQVASGISIIEERKQVHRVAK
Ga0007851_1003363	F023848	AGGAG	MTGKIDIPLFGEQKTILKDWLTTDKHCIDVVPVGSGKTFLAAIALPIFASDAKFHKGKDIIYSAPTGAMIKSLIWEPLKQSCVKHFGLVDGKDINNSELTIKFPNGVFIRCKSAEQRENLRGLNVGVWVADEAALYTRDTLQEITNRLRPKVGQPDTQGRLIVISTPNGAGPLHDLFNLARDNPEKYVVRHYNYMEMRSGNRNFIEEQKRIISPLKFAQDYMCQWESVADMFYYAWDKTKYTKKIEDRGGPLYSFHDFNKRVMCAVVAQVRGEHTRDGTIEVLRTYAIPDCSTEGIAQAIRDDFPRRRIDSIIDMSGTQLNRDTTSAFGITDRVILERYGFTIVNSRRSNPLVSDTDNTSNAFIARGGLWVDPDDKFLLDALGTYHFEDASRKKLVKYTEQRYAHIDGLGDSIRYGIHHLFPITHETPYNLPEYLGMDPKYQQLTQPGLRYMPPSPVYPGGPTWEQIMMGEDEAEDYQKWI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007851_100336

Overview

Ecosystem & Geography

Associated Families

Sequences