Scaffold Ga0007850_1000344

Overview

Basic Information

• Taxon OID: 3300003783
• Scaffold ID: Ga0007850_1000344
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4793
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040411	Metagenome	161	N
F055534	Metagenome	138	Y
F081067	Metagenome / Metatranscriptome	114	Y
F087091	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007850_100034413	F055534	GGA	MREHYNDEEREAARILDLVRMGDKNIPRSVINWALWCLGDAVGQ*
Ga0007850_100034415	F087091	AGGA	MILSNSYPTEVYVSDMGYFVIKQDCFECGHQTQFLFTPDQTKLLFNLLPDFLKEQQEKWTGLHSPHESTNDE*
Ga0007850_10003446	F040411	AGGAGG	MTEEQILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*
Ga0007850_10003448	F081067	AGAAG	MTRFTEKYVRSDNQWVKITRDNVQRTFTFARGYKNEFKAHEISTLSFKWVSNWTEALEKANKTIATFA*