Scaffold Ga0007850_1000152

Overview

Basic Information

• Taxon OID: 3300003783
• Scaffold ID: Ga0007850_1000152
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7142
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F010592	Metagenome	301	Y
F069612	Metagenome	123	N
F078045	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007850_100015211	F069612	AGGA	MTCQVCKFFVFNQNDMMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATTVAQETTYDIHTDEVKPKRGRKNAGTKE*
Ga0007850_100015216	F078045	GGAG	MSYEHFVNNYQRWLKSPRTLSEAFKDAEYATSITRPEDGEYSLFWGLLGALMFVAIFGYGFWRYVNL*
Ga0007850_100015217	F010592	N/A	MSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGFPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF*
Ga0007850_10001523	F007166	GGA	MDELYQVMTEMEQRLEIALDNMEYGTELSQDDVDVIRAACGKPNNKRNNLLQSVFEDFGKVFGGSNVLACP*