Scaffold Ga0007850_1000017

Overview

Basic Information

• Taxon OID: 3300003783
• Scaffold ID: Ga0007850_1000017
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17757
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F029334	Metagenome	188	Y
F029335	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007850_100001721	F000652	AGGAG	MKVIVTTTLNQELEVPDNWDRLDVFDFLAECQSFRTAFQGVSNEDQTARIVDLHVVTEEVLELGEEAFDD*
Ga0007850_100001722	F029334	AGGAG	MKELETKSAGYFAVAAAIDAQRRNSNNKSSYTQEQIRQAVTARDLLDTAFSYSKLYINYRKKFIAIKAEGARAKDALAREVVKLFESNGYGVVSTPQGMIVRIDK*
Ga0007850_10000177	F029335	AGGAGG	MKTITTLRNGNLYEMSITEAIEIVETYKRVNGHPGVLEAVIEMGDLVALDELPTIQKVAYRRFMKDMQALFAPA*