Scaffold Ga0007850_1000015

Overview

Basic Information

• Taxon OID: 3300003783
• Scaffold ID: Ga0007850_1000015
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18741
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001201	Metagenome / Metatranscriptome	749	Y
F038015	Metagenome	166	Y
F066312	Metagenome	126	N
F075507	Metagenome	118	N
F078139	Metagenome	116	N
F096344	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007850_100001519	F075507	GAGG	MKKIKDKTKEQLHDEIMGLFLGQEMWTTLEALIETTVGVAEHMELDRFDLMRLIMSELELYEEMESVQ*
Ga0007850_100001520	F096344	AGG	MTDLKEEYYFEYMEELSYKRYTQVLSRYPNCRDPEHPECELCREEENEEN*
Ga0007850_100001529	F066312	AGTAG	MKIELIVEHYAKLAIKPAWLDYVRQQVKLLEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007850_100001536	F038015	AGG	MIAWLFGDLFYWIALIALAGGAILYVLSYFVGFIPMLKAHAMICKVVGLLLVLSGGFYVADNHGYQRRVAEDKAEIDRLNAEARAKEAELSIKLARASSQLKKAKDDIKTKQASIDSRIDSGELQLPNTCGVQASSDAPNGNTTNGSESTRQALKDIVQIATEGDTAITSLNSCIGQYNQVREMVNVKP*
Ga0007850_100001539	F001201	N/A	MYKEGRQIVTDIAHEIDGVVKDVKTVQKKAKGLFGFLSAVFGKKEEVQLEVAQPAKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNALKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNTELSDYMVYHVPNELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWKRQQKADLIKGRMVALAITALIMMYAWIMILSLTHSQSY*
Ga0007850_10000159	F078139	AGGA	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQ*