Scaffold Ga0049118_10001814

Overview

Basic Information

• Taxon OID: 3300003769
• Scaffold ID: Ga0049118_10001814
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3826
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011565	Metagenome	289	Y
F086694	Metagenome	110	Y
F088370	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049118_100018143	F088370	N/A	MALPDENLVKDVWAAMWEVQMHARREKVQGPLGDFGKLANRYFEQWLTKPDALRLYAEMVFAGHFDLQKTTRQLQRLYSCYASDTAQACIRLILLLKKAACVANDG*
Ga0049118_100018144	F086694	GAG	MQVFEDVDAAAREYWLVTGDDQEKLDKVPDVGAEPTLNEYYEPSALQKEYELLFMAGGLALTGWAAFKFL*
Ga0049118_100018146	F011565	GAG	MATPSPYAKDIGNLLYHSAIVGGLSVGYSMVGKKLLKMKPADLGRLDVEDSAKLVGTVALALWTQDMLVKQGVIPANIIKTT*