Scaffold Ga0005853_1066658

Overview

Basic Information

• Taxon OID: 3300003754
• Scaffold ID: Ga0005853_1066658
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Ontario, Canada
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040115	Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005853_10666581	F040115	N/A	LSLISRILTRVINEGSTIVMKAINSNSGKQLRKAVGCAPRGKRALWMLNIQVGTQSISPLMWSIETGSLEAAKAIIVDLLTIRADRDRYYYGVDILFERHPDVIQRICLDAPALMQPLLDGLIWRSRTTDNGQRRTNYYVRHLLLDENNEFSKATEWITENQDPKLVCHPVVSLVTDMVWGRVAFRTFLFGRAWFIFTLLVFIIAQS