Scaffold Ga0006780_1037131

Overview

Basic Information

• Taxon OID: 3300003735
• Scaffold ID: Ga0006780_1037131
• Source Dataset Name: Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_23 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 552
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.97364
  • Long. (^o): -123.117453
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005505	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0006780_10371311	F005505	N/A	DKSGSYIS*FYDAFLKEIQDA*YWTMFVFIYF*LHHFNASTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVISPTHYEGLM*MGLFFILLAFLPIIYN*YNPFHKHLPAIPMQNSLLQTSAFIIFMLSMFCAASMLPCGRYYYEPEGGYVGNP*VKFSFQYIYLYLA*FIHHLDLVDH