Scaffold Ga0040879_107197

Overview

Basic Information

• Taxon OID: 3300003730
• Scaffold ID: Ga0040879_107197
• Source Dataset Name: Thermal spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - Beowulf (BE_D) (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 698
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F061049	Metagenome / Metatranscriptome	132	Y
F063847	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0040879_1071971	F042426	N/A	GNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYSTTVLGEWLTENFDKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPRAPVQVQEEGF*
Ga0040879_1071972	F061049	N/A	MSIFIIRFEKDNSVIREWVFEGNEDLERSLIEMLDIDFQFINKIRGLEK*
Ga0040879_1071973	F063847	AGGGGG	MRFKKYIFCYDQYSYLQDKVITHHVSIYAKSLREAESKLEKLGYKDLYLKKKKRKVNY*