Scaffold Ga0004769_103457

Overview

Basic Information

• Taxon OID: 3300003724
• Scaffold ID: Ga0004769_103457
• Source Dataset Name: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2B (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 505
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: Colorado Plateau and Sonoran desert
• Coordinates
  • Lat. (^o): 38.42
  • Long. (^o): -109.4099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F038139	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0004769_1034571	F038139	GGAG	MEQRKTEPKQSRFKVEQLERRIAPSAANFPPGQFPSGNPAKAPGNSNPNEMGGPKS*
Ga0004769_1034572	F000818	AGGAG	MQPQEKKSRFQIVKLEERIAPAIVGVKINGGGNTPNGTANGVPTTNLNPAGFAPPGQN*