NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008089_101474

Scaffold Ga0008089_101474


Overview

Basic Information
Taxon OID3300003710 Open in IMG/M
Scaffold IDGa0008089_101474 Open in IMG/M
Source Dataset NameTropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location
Location NameAmazon Forest, Brazil
CoordinatesLat. (o)-10.0Long. (o)-62.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098815Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0008089_1014741F098815N/ASK*PSEQLALPTGMRGQSLACSVVETLPVCSPLRLLSRIGSVRPSPSAVFLPARSHRLGTAFPLPCSSPATTVPFREPPRRGQSSWPIPSASISNLSSSPFGLELRPSAPFITSPGAFLAQNPLPAGRPKTLKRPSNVRSPLGLSSLRLSALGQRLNLRSLPLCPARFSFAPHKR*
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