Scaffold PicMicro_10047330

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10047330
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5040
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F006423	Metagenome	373	Y
F006919	Metagenome	362	Y
F078839	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1004733010	F006919	GAG	MKSFKQHLKEFAIRSTSDLVFEVGGQGLASSALKIPISGPMFKRIWPDTVRSTVFHTTDLDGLKALKKIEGGKKSISAFFSMMARYMESGIATGGGIVAEMDADVIVSARDDIMSEVDKGGRRWVMMSWFENQTRDRSKFGKVENDLNGLIKQLVLKHLGPILGKEDVKKLSEFDLWSNMKRHLKGDGKALSLVIKDYFDGVERIIKKNSEVMGNIFYGYAKSKRMTDNAWDEQIVNNIKVKKIHLITFTQTPNEKEEEIIEYVDSTNWPLKTWDASIDLEIYTRQVVAKEIGRTIK*
PicMicro_1004733011	F000245	AGGAG	MKTFKQFDEGSFDASDKKMDAFVVKEIKKRKLATFPVNATDDYTIKKGKPAFKFPSPSGSMMIHVWLRKMLPSKGQPKGMMAFNYQLEDK*
PicMicro_100473302	F006423	N/A	MKTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATGGQSILSTVDFKKLYKR*
PicMicro_100473303	F001493	N/A	MKSFKGYLEEKFQDWKSGSGPAWTESLSTMLFDLPRAGLVDLKIPLSPSIMKRVWPKSVRSKVFHLTDLDGVYKLTKLGKKKSISAFYNIDDHMISSGIKTEGGYVVELEGDVLAASPDDISSQPDKSGRRWITFSSLMNPSTAADPGLGGKTQLRGIETSLQNLLVKILQDNGKDVDVATPTNMIGLEWSGLGMATGGKEKSIIIKDYIDGMEKIMKQYSKPLRSVLTDYTKKRTLDPDPDSGDVAMWDELVVNNFTIIKVHVGSEYGPDFEDPAVVDRFSKYFDKLGVSYQLWQDEGDMADYIARAV*
PicMicro_100473307	F078839	GGA	MTEEKLISNLVLISFTCLWFIVLFMFGLLVYQSVTHQDQIDELIKSNAAVTALWMEEK*