Scaffold PicMicro_10043398

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10043398
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4346
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081441	Metagenome / Metatranscriptome	114	N
F090505	Metagenome / Metatranscriptome	108	N
F090506	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100433981	F090506	N/A	ILSMSQINENIPRLEKAWKLLEEGKVFLNRKNPLRAIVKGSRVNYRVNIAAQDCQCEDHEYRPDLVCKHIRAAQLARDIQIGAITLEVKN*
PicMicro_1004339811	F081441	AGGA	MVLSNREKFVAFYSMFLTTHIGLGVNPAELDGDGMGQVFNAVLETVRKSTCPDVSEDEVKAIAEDFNIEMFKIRTILDEAVRSQRLGDRV*
PicMicro_100433988	F090505	AGG	LTNYEIWLSGNGGDIADSKLFSIFLEEWSRPTLGQQLKIKGTLFQVDRTDPTSNPAGQMVKIFVSPYNPNKPFARSMRIGRRMRDSVRY*