Scaffold PicMicro_10040872

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10040872
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5056
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F071313	Metagenome	122	N
F093989	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100408724	F041251	N/A	VKQYNINDVTEIAEAIKSGDRIENDIGTVIDGFFWFPDEMQWAAKWQKEEEQDSPYDYFAMLLDPDVFKDTEDVEEIMAGIEYWWHRSQIYAAAYLVNNKPLVASRYTEDIANDSLRDLVTMQHEVQAAFKSQGMEVGPNAKPHDIWKVVRTTAQYIHNNVRGVH*
PicMicro_100408725	F071313	N/A	MGDLSKGEIRALVGVLSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKINRRFNNSNTYEFIWTGCTPAVEGVLEPPVHVPLPNRPSNRPLSIGEFLKLYPKPSPPSGWQSYIWANATKEWKDKGLEEIKDKIFLDIRDRLHREWRDVEYWPNPATYLKQQWWTQPMEGRTTTDRETSDTRYF*
PicMicro_100408729	F093989	AGGAG	MAGKQAFDNTNKGRFFLNERKTAKDPALSGPGNYNGTDMRVAAWINPNEDADNNKVWKAFDYLAENAVINMRFSEPKQKGGGQSNRSSDMDDDLPF*