Scaffold PicMicro

Basic Information
Taxon OID	3300003702 Open in IMG/M
Scaffold ID	PicMicro_10037316 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003702 Open in IMG/M

Scaffold ID

PicMicro_10037316 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3627
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3627

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	18.55	Long. (^o)	81.716667	Alt. (m)	Depth (m)	5000
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

18.55

Long. (^o)

81.716667

Alt. (m)

Depth (m)

5000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F045805	Metagenome / Metatranscriptome	152	Y
F097505	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100373164	F045805	N/A	LKAVVEVNSVYSIGIPQPKRVIYGEGEVIWRAGKYRPGLLYGYSPIYAVWSKVMALSHMDEYIRKYFDKMRPPRGMLIIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKPGGKNMAQWLDFTGSLKELEFIAIRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQDILLKSFLQKLALLRGVNDWELRLKSGEETDRLRDLQIQGVEIENMKSLQGLGFEISRTHTGEFKVSKDPVVTTAEMAQAEGTLDENPAALKPGGRGRGTAAPKEDMQRFEGEPQHKVPSKVGGIAGGHPASGHGTSLSRKNFPKGITPLNFEAVKRTLQSGIDFGWTKKKTIDELRTKAFMTVRDARDIVKVEYESVRRWDDEEEG*
PicMicro_100373166	F001235	GAG	MGTKLNVDTGGLDVGKKLWEKHQADEYTHVDNYKEAICINCFSKDATAATIADICGECAGKRGREPLLATITQKMYGLCFFCGRHQFNIEQINARFCRGCHRKIADVTKAYNKKGGMFGADPFWISMRKKMGKDWKEIMNQNLRI*
PicMicro_100373167	F097505	N/A	MDWKKKKTFRCDCSIHDVVSRVIEYFIITPIFAVGYLAVTVPWMLFVIKLDGDQFADFLWQSVLVDLIVAYPLAKLVMKLKPKIERIAKLGH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicMicro_10037316

Overview

Ecosystem & Geography

Associated Families

Sequences