Scaffold PicMicro_10037208

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10037208
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3172
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F044546	Metagenome	154	Y
F055785	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100372082	F044546	N/A	MERPKTKLHYKPPKHCSQCKREVYHTVHTISSYWVDWYGTDEKPICVDCYHPLNIISK*
PicMicro_100372087	F005149	AGG	MTKCILCTAVIETGHKFYDHLEDIHMMPIRRLRFGDDGGPREETHSECMGRFKFNHEEYGTEQCWCPDCVGGETLRVINDICSKHGQLYIKGKHK*
PicMicro_100372089	F055785	AGGAG	MSYIKIRDEWKLFIGWAVIVILLLLSGCASATPKANEKWSDESITLATTLTGLSMIDAKQTSMMDEYRSYFDRIEPITYAHEVNPLMGELPTRDKVIVVKLVSGALTLYGLSKMKEVNRNKALMWLNVFYLIVVIHNNSLGLNINL*