Scaffold PicMicro_10036866

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10036866
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9043
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029898	Metagenome	187	N
F033643	Metagenome / Metatranscriptome	177	Y
F049935	Metagenome / Metatranscriptome	146	N
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100368661	F049935	N/A	MQTDIDFEFWDAQIKHFIGIVKSDSASGRNKKVAKTHLIEIQSRLKRDVRDLNKYIKELEAQL*
PicMicro_1003686614	F029898	N/A	VGQIGYTIDSVMRKIIEMIRKAIKKNPVRTQELTYQREYDGAVKNYFVNIFEDWADYYVAYTYDKHGANCGVKRFNKGNIQKMKPSKRNFALVTA*
PicMicro_1003686615	F033643	GGA	MFSASEIYPGFNITFANGWEISVQWGRDHYCANRDNSNKESRTSTTAEVAIFAPDKDGFPREWWSYDEDINRVIEQPEETYVNGHLTTDQVANIIAIISQKSA*
PicMicro_1003686618	F096037	N/A	MKTTVYAWGAQVSNVLHIYAGMTTQKDLGIRLNGVKEIMVGTADSWFGGPQDSAIGAYNLDLIYADSSQNYSRHKEQRAINAGWAVEQKYRNASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGRVFQAVESWIKEKVQEEPNLKRKFEAALIAKQQKQALIANITRVLGLKPVLV*