Scaffold PicMicro_10034213

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10034213
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3358
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F035271	Metagenome	172	Y
F036920	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100342133	F035271	N/A	MPFALIPDGFSLKKVTKLQQQAIKDKRRHDNVVTVLNNPEIVKQIIITGVAFLAARQGKEALEELKNLGVNISQDVEDAFTKKRDVGAPVGVSLEDIVDEALKRIPFI*
PicMicro_100342138	F001227	AGGA	MVVRRGKKRTARRKRSFSINLLETGAGLAFLDAANAGTAAQSFIKGDLKGGLDTLSSAFKTNKQDMIKIGAGTLAAKLVLGSLGGSKVLGAIGPLKLRA*
PicMicro_100342139	F036920	AGGCGG	MGRPRKSVRPASFSIDAKMYKLLQELSDLEKKPMSHFVNMALYEYKPITQLDIYRDWWKCDQRDCAVLNPPAEEKCKKCGQRALWSIIKEHNDRMTKYK*