Scaffold PicMicro_10026952

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10026952
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4432
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010790	Metagenome	299	N
F013943	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100269524	F010790	GGA	MIKLKDVLEEKVDLSDVSWNHQKLLKVGSDYIHKARDGRLWYELEDDIKKSKNRTLIKYFKEYEKARLKLSQAGSMLTRAFNLEKR*
PicMicro_100269527	F013943	GGA	MNIFEQGLWKIINEGSPTGTDSGLGIITGDAWPDGLYTKRGERRYVGPASLSRGMQQIDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGHSEVKANELRDDTPPLSPKQRIYGIHGFHRKQEYTIPPESANFHSTSETLIKPTTPPEGTKSGGIPATPEPGSKEMGSASGYRQAQKGGESIFAGNKKLWGKWEDHRIGSKVDGREWKGGKLVDLLPKGVK*