Scaffold PicMicro_10025562

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10025562
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4519
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F013899	Metagenome / Metatranscriptome	267	Y
F018553	Metagenome / Metatranscriptome	234	Y
F022673	Metagenome	213	Y
F043989	Metagenome	155	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100255621	F022673	N/A	MKKEQIVNPRIEIAEKIHDELRASLELERKLLKKELTLQETMQERVAVRKDLIKCERKIKNLTEQLQKENNNRNKGTKWNQQQQQP*
PicMicro_1002556210	F054945	GAGG	MKWVILIYLAMWTNTPEVMKYTVLEFPAYDYYDCIDIAEEINDIETAYNSETAYVRSFYWVYNNMLDEIKAECVYANPSAPYPKWFNKKNE*
PicMicro_1002556213	F002348	AGG	MFMKTKEKLMMYGGWLLSLSAILVGASFLWPHIHVALLGFALIYIGVRIFNFSTFKEYKEKRMKLLLKLFE*
PicMicro_100255623	F018553	AGG	MLCIPRLRIAILNEEIALWEKRCDTEPRSNLYYGYIRDMMKGRVKELEENERLD*
PicMicro_100255626	F043989	N/A	MVTTFIWNYGLYVIIIWTLFESSCSREGSLPYHPPVFAPMYREECYSDNKNFLCMDKEKEASYTSPFLYFLFMSEIK*
PicMicro_100255629	F013899	N/A	MFPDTCEIEEGEKGQFELFQSGKSFMSTGHGKFFGLEDVKEKLSESGQDLFTNR*