Scaffold PicMicro_10022450

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10022450
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6430
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010879	Metagenome / Metatranscriptome	298	Y
F016206	Metagenome / Metatranscriptome	249	Y
F023717	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100224505	F010879	GAG	MAQKRKVLKEVLFDDVEEKIEYDFLTRDQFFTKVPETRPMSVRGIEMWERYLQDPKGFKF
PicMicro_100224506	F016206	AGGA	MAHAHKGKKKVSKAMGAILKAPKKVEKVVETVAKYVNKTHWDTKEAFAAAVEKTGVHPDAINVNAEWDFYQSDRDGYKNALKLEN*
PicMicro_100224507	F023717	AGTAGG	VAKSRKMKSKKELEKEGRTLGIELDRRHSKEDLIEELEAVEPASADDVTWNSIEEFTEAVTATGMIFDRDFIPVNIEALYEAFTSNPEEFKETPAYKFLTQ*