Scaffold PicMicro_10020649

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10020649
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4726
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011446	Metagenome / Metatranscriptome	291	Y
F021856	Metagenome / Metatranscriptome	217	Y
F025588	Metagenome / Metatranscriptome	201	N
F035477	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100206491	F021856	N/A	MTEKKLIKLFKESADKLAKKSKNNSTAIHTMGGLGEIEHQRICPFRSVPFEDCPLCILASLDKL*
PicMicro_1002064910	F011446	AGGAG	MENMMFEWMSSQSWWGIVATIVVIANGITMTLRDRYAESIPVLGKIWPILNWLSLNIARNKNDETVNE*
PicMicro_100206496	F035477	AGGAGG	MKSFRNLVEAKMSRQHFQLIADVIAGLDISTTIKKTIAEKFADAFEDTNPMFKRDLFIKATKKKDGKAIWIAGMSK*
PicMicro_100206499	F025588	N/A	MKKSYTQFKKELNEDGMLHGEYGTENPSTTIHYGPNDPEIVRTASNTMIVPKYRLSEDEKGCNHTCTHWRDSSYCAEYYFKCDATYICDSWKDSGI*