NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicMicro_10019756

Scaffold PicMicro_10019756


Overview

Basic Information
Taxon OID3300003702 Open in IMG/M
Scaffold IDPicMicro_10019756 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4867
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)18.55Long. (o)81.716667Alt. (m)Depth (m)5000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001721Metagenome / Metatranscriptome647Y
F077402Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
PicMicro_1001975612F077402N/AMKELKLQANKPLDRDYFKYKDNPRKRKTRLTDCCGLDEDHKGLNVNNKEDWKLIEEYIEDSLADHSSTETITPISCKVCGRLLRYQSTLNDKAWEKGHG*
PicMicro_100197566F001721GAGGMNRNSIWSNERKEIATWLSGYLAMVKKWVDKILDNEDHDVDKNKIIKLIDEWIGWLEETKGKIMVMRDVDPEEIKEKE*

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