Scaffold PicMicro_10019558

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10019558
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4899
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062835	Metagenome	130	Y
F064800	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100195582	F005948	N/A	MVELNHNAVSFNSDTLIKGGHGVIVGVFVTKVGSGSNKVEFKNGTTSSGTVEFTIFTAAQGTYPNINRRFENGIYADCTGSAEVTVVFK*
PicMicro_100195585	F064800	GGA	MGTAMYDSLNDMQILLKADWGTTDSSGDVPEIQIIWERKVVGLADYTRDTILLTPKRENIEYFGLYGSNFLHHVEIQIDIWSYMNQDRLENLTHEVSKIIKNNIRRTNFVDLLLTGSISASDTYRNIWKHILTARYRKLDPE*
PicMicro_100195587	F062835	N/A	MAIKTFEIDYGDPPKKEIMEYEDDLTFGELENIVNQSIDLSDVSKPKVNIPKYRMAILTKVLRKAPFPINDAVAIRNLKARTAKQIISEVMKDYPLMRFLEDWMVTFVGTQTVVSLPTESTTS*