Scaffold PicMicro_10019066

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10019066
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4979
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F015147	Metagenome / Metatranscriptome	257	Y
F047104	Metagenome / Metatranscriptome	150	Y
F081424	Metagenome	114	N
F084710	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001906611	F015147	AGGA	MLMKNKMKKLNWLINDLGLNELNAWLWMTGGAALTAAILVLLSGGGAEIFRYWRVVALNL
PicMicro_1001906614	F084710	GAG	MKNEMKNEIVHPIDNGRVITDKVLVSCCGCNEEEHITREAADEWTDTDWFMCNECE*
PicMicro_100190662	F047104	GAG	MRDATMTEIRRYWKERRTREAKRDTFTLNGNTYEVSHDPAHQREQLEGYCGNNPK*
PicMicro_100190664	F081424	GAG	MISCEEVFEADANARAEFDVVCDEWLNEAVVAQDEEVCWCKSFESCSLCFGKK*
PicMicro_100190665	F011494	N/A	MRKYSVVDEEGVVQEFVQSVGEHDHAALNDAIELAGRAGEDVVEHLANGSRVVVWELGGEEPWDGFRSDAEADGDALASAGHGTDEDYGYFGDEALCGE*