Scaffold PicMicro_10018594

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10018594
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5460
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047901	Metagenome / Metatranscriptome	149	Y
F076479	Metagenome	118	Y
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001859410	F105323	GAG	MNLKSKSTLFHTIIERVDQQLARMPLNDSEGAPLEDSTDLDMHIDAIKEMKITNAKGDVIHPFSTAVATQLVYDELTERREQN*
PicMicro_100185947	F047901	N/A	MKYYRIRVIVQGQLYIETIEAKDIWAAFKILIKRAADGLVKVKETVGFYQRKQVQITYEEVTDGATTISANEVRPGTQVGKEGFDIAT*
PicMicro_100185948	F076479	N/A	MSFLAFIMFGHICIENSGPFDKCWNIYHTPQIRYSSERTCLKAANDYLHGAQLYYRKQDVAVSELELYCIGINPINPV*