Scaffold PicMicro_10017535

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10017535
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9635
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000904	Metagenome / Metatranscriptome	843	Y
F002232	Metagenome / Metatranscriptome	580	Y
F003936	Metagenome / Metatranscriptome	461	Y
F012781	Metagenome	277	Y
F015348	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001753511	F015348	GGA	MKQKIITLKINKANPGQLVALACELRIMSKSWKKFGPEIEVLAGKLKELKHGHKSNLKNW
PicMicro_1001753518	F002232	AGGAGG	MSIKAVKKIRKLKDELDKIHEKEDDLLFKIDEVIDELEDPNED*
PicMicro_1001753520	F000904	N/A	MTKKDHIKIYDEFFEHAMHLLNDHQKSPELIAGTMMAIAQRIYRTQLNDEEYEEMMEVIKDAPVRPYNIKKVRLH*
PicMicro_100175354	F003936	N/A	MIEIFEIFWSAKIELRVVILATLIMGCFWYWQDHKRKQKDKHQERLNSIK*
PicMicro_100175355	F012781	AGGA	MFGKNKNAILTTTLIVQVRKYEDEQPYFYLYSPPSMADETKAKEVVKKLNELEKYKVDEIKKGWQTQYYTLPMTL*