Scaffold PicMicro_10017412

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10017412
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5280
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F014551	Metagenome	262	Y
F091857	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001741215	F091857	AGG	MKKIISLVGAICLSGCVITEKEIVYKKISFADKDGVTTIYYPFSWEQHLRPMDDGTPKTMLVRFRQALNSQNEK*
PicMicro_1001741218	F007550	GAG	MKKIISLLLLVGVVSANAASLELIVKNQKTLPNGKAYGLESGIYFELTNLEPFVMYKLQYSEDFKKWTDLVHLGTYKMAMTSPYWTWKELPPVKCFFRIVVAW*
PicMicro_100174129	F014551	GAG	VLTFVKNYETIKSVMRDMFKFQYNPAVHEGQVNRAGLVFDYLGVIVDHFKNQTEGETFSGVTVELHDDNGSTGQTRRFRFDRMVNAENVVNKAMAIHGGRI*