NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicMicro_10014691

Scaffold PicMicro_10014691


Overview

Basic Information
Taxon OID3300003702 Open in IMG/M
Scaffold IDPicMicro_10014691 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7143
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)18.55Long. (o)81.716667Alt. (m)Depth (m)5000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005821Metagenome / Metatranscriptome389Y
F015222Metagenome / Metatranscriptome256Y
F081206Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
PicMicro_1001469110F005821N/AVVKTLVIIILLFNGTVVKDRISFTPPIDVMDCWSFGNTYYEVMSTHRWGDQKGAPNFKFDAMRQGWYLNDGRGTIQGHYCE*
PicMicro_1001469119F081206AGGAMKPLPIGKMQIEVYNVEESPLHQIVKKLIYKKILDLEPYNFNHVSDSTGDLAKKIYGRYADPGYQERELVSYTERDAKQKEIRETMKWGDITTNTILESIHNTLDVSDEQYGPDPFDGRDRRATTYIPLRSYKDKVRMEHAFFLDGLRIVPDITLLDEKGKAATVIEILHTSMPKADKLIKLIESDLNVIFVLADQAIEELSADMTCRRASFGFPIREAWLGFTNKKEKISRAVNILLQKKMYRDKEYITHKDVITNTEWNPKNKWRKNRMDVGLRITTKYPLGRELIQDNHNLSHSMIQMKETSDLIILLRYLKKYTKEEKTKNEGQMRQGQRAI*
PicMicro_100146914F015222N/AMKLRFCKKCNKMCHCANAEKDECQNCDCNSREENQRFENTGGLVIDDTGECESCQ*

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