Scaffold PicMicro_10012954

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10012954
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6391
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F051978	Metagenome / Metatranscriptome	143	Y
F074979	Metagenome	119	Y
F076174	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001295413	F074979	GGA	VNEIKVYIHDNQNIESSSKIFKLLKDCKLEFAIEVFGHFKSDEDAYIANVVGEKVKKLPHVVIDGERVGGYYDLVEYLMQKNIINYAGEPTWKMNN*
PicMicro_1001295415	F051978	GGAGG	MEYTIYASLILITLMCLWAIISIPKNYLFKSLLVPVMILVAISTWYTYNSILGYGTEFKPTKEVVYHFHVADKEADKIYVLLTTFGEDAPRLHIYPWSEELEKQLEGADGQNRAGILVVGIIRRNELTQNRPKPNEEQYEFYIMPPNEWMPKD*
PicMicro_100129542	F003827	GAGG	MPEGKWADWQVRTIAENMAEKRPKREWFEDDGHGEDYFTSLKSWSHITARQLYSMELEERQLIIFVHHMGIEHVGIETFDPQDKGRYAQQSDFTPNEGDAHNTPRLDIAGSE*
PicMicro_100129547	F076174	AGGAG	MIIMPTIEKFQIKTKDQKRVISEHGPDELEELRKLIEGTDNIIQYVFKEIEPDATVH*