Basic Information | |
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Taxon OID | 3300003702 Open in IMG/M |
Scaffold ID | PicMicro_10012954 Open in IMG/M |
Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6391 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
Source Dataset Sampling Location | ||||||||
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Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
Coordinates | Lat. (o) | 18.55 | Long. (o) | 81.716667 | Alt. (m) | Depth (m) | 5000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003827 | Metagenome / Metatranscriptome | 466 | Y |
F051978 | Metagenome / Metatranscriptome | 143 | Y |
F074979 | Metagenome | 119 | Y |
F076174 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
PicMicro_1001295413 | F074979 | GGA | VNEIKVYIHDNQNIESSSKIFKLLKDCKLEFAIEVFGHFKSDEDAYIANVVGEKVKKLPHVVIDGERVGGYYDLVEYLMQKNIINYAGEPTWKMNN* |
PicMicro_1001295415 | F051978 | GGAGG | MEYTIYASLILITLMCLWAIISIPKNYLFKSLLVPVMILVAISTWYTYNSILGYGTEFKPTKEVVYHFHVADKEADKIYVLLTTFGEDAPRLHIYPWSEELEKQLEGADGQNRAGILVVGIIRRNELTQNRPKPNEEQYEFYIMPPNEWMPKD* |
PicMicro_100129542 | F003827 | GAGG | MPEGKWADWQVRTIAENMAEKRPKREWFEDDGHGEDYFTSLKSWSHITARQLYSMELEERQLIIFVHHMGIEHVGIETFDPQDKGRYAQQSDFTPNEGDAHNTPRLDIAGSE* |
PicMicro_100129547 | F076174 | AGGAG | MIIMPTIEKFQIKTKDQKRVISEHGPDELEELRKLIEGTDNIIQYVFKEIEPDATVH* |
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