Scaffold PicMicro_10012598

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10012598
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17071
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005883	Metagenome / Metatranscriptome	387	Y
F017842	Metagenome / Metatranscriptome	238	Y
F019664	Metagenome / Metatranscriptome	228	Y
F062841	Metagenome	130	Y
F074979	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001259819	F017842	GGA	MPSYTMKDPDGVEHDFLCTIAEMEEKKEQGWRVVFSPPKHNLIGHTGDIISHTSDGWKDVLKKIKDKSPGSNIEI*
PicMicro_100125982	F062841	AGG	MNKLIKCVVIMVMIMIPVNVMARMYPSQIAMPSICFTDPRELYTYQELILGETLMAVAKTLKTARPEDQGWIVIFYSKEKDSWSLAGIVAKEACVMMVGHGWDTIPFENLPPFYEEHKENPKIPQPEVPEAGNNDGVLDGKL*
PicMicro_1001259824	F019664	N/A	VKDTDDDKQVDGSDEGAIPSTSTNLRGPYDGIFEFSEKQREYYYTQREWDRTIGYGKVPDERNTELRGVKQDRRTDETLFEESDT*
PicMicro_1001259829	F005883	N/A	MNITEAIGDHGLGKAGMVYRRGHQIVLENERTGEHVAVKVVMHDERQGWLAENGEGDWQWYRINNEYWPNEKDYWKYIKKVGT*
PicMicro_100125984	F074979	AGG	MDIVVYIKNIDSSNKMLNLLRDCGLQFEVHAIEEAYITNVVGEKVKKLPHVVIDGERVGGYYDLFEYLINKKVINYRGDLCQKIL*