Scaffold PicMicro_10011967

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10011967
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8254
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043614	Metagenome / Metatranscriptome	156	Y
F045140	Metagenome / Metatranscriptome	153	Y
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1001196710	F087296	AGAAGG	MRFAQSATCTCLTKLKSAKSVDGKMTIQAEVQREKEAVLARTARPHESEWVLKWQEIESDMMYNVPWKKLYERVGLGKYIGSRWSVAQGKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTYKRRRF*
PicMicro_100119674	F043614	N/A	MKNITLTFLRKGSTVWSDGDDYYATYVHEPTKSKWKLLWQFTQSGRHIGSIRKWVKNKWEHQGEVFRFDLIDQGLKVELDLLESDETYESVSRAMSEAATHYPGNTLI*
PicMicro_100119677	F045140	GAGG	MIRLLTVFLLSAAVAQSVSLEIKLAYQKVTPMGISYGSPGGIYFEIKDIHPFLPYWVQYSHDLKIWKDLYNFGSFGNNCTSPLFHWYELPPDKCFFRIVQKY*