Scaffold PicMicro

Basic Information
Taxon OID	3300003702 Open in IMG/M
Scaffold ID	PicMicro_10008239 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003702 Open in IMG/M

Scaffold ID

PicMicro_10008239 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8550
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8550

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	18.55	Long. (^o)	81.716667	Alt. (m)	Depth (m)	5000
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

18.55

Long. (^o)

81.716667

Alt. (m)

Depth (m)

5000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029900	Metagenome / Metatranscriptome	187	Y
F049038	Metagenome / Metatranscriptome	147	N
F076490	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1000823910	F049038	GGAG	MGNQVRYVDLGLVSKEMYTGIWEYGNLIDINCPVVIKFSSKKQTVTFFGNSKLDISSFFNGEIKDTIARIYEDPGNIPDDKMAYWIEGPNCFNFILYFSRDVKQLFIQTIRECCFKFGIETFWNGRNDVFFKIGNKQKKFFGGSYEVINDWHVTAGTITYQFDSKLATKVKELDINNVLKTPKFEPDGGDVSDVVGGLWEVDSTINPIKFNDEFLKILMNKLSGTLEKNNLSDEEMQLLINRGKKRLEDEEWLLRGNNENFI*
PicMicro_1000823912	F076490	N/A	MTRVNYETLGKFIDIDERDLEFERVTNSIDVVDREYGVDVIFDYYRRHGFPHYKIREEEKHEHMRKLKRFDVDTIFIDN
PicMicro_100082397	F029900	AGGA	MNRVVRLLLIGMVSILSAQTAIIKNSIIGYTTIGDTVSFDKPHLWTFIKSDDSKWMASIWVDAPWADEVVYVEELFYKPFGDIRFGKDSDKFTIGLGRQAIPFGSNIPYLDLTRGDKFTYQTPTANDVGLLYFGDGISVYGGVGDFFIETYYGSDIENELESLSTTRFSYEWKDQFIGFSYDSEDRQSLDISGYSKYVDYVTEFREDYQWGRAIVKTGKYGLSLLAGFESDKEKTQGLYGVVWQYGEPNRFLSVELSGEGDVRVKMYYGFNLNIGKENE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicMicro_10008239

Overview

Ecosystem & Geography

Associated Families

Sequences