Scaffold PicMicro_10008216

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10008216
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8565
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008692	Metagenome / Metatranscriptome	329	Y
F010477	Metagenome / Metatranscriptome	303	Y
F105490	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1000821611	F105490	GAG	MRGKLGKQLRQEGAIKRIELMIERYEEILPAEKEQLKLMRKEKDIPPNNIPTMEKKVKQFEQKLERAQTTFKNTKKSLNR*
PicMicro_100082162	F008692	N/A	MTKKKRKQTEEEMYVPDSEEEFQADLAAEDMRYLHYCREQEEMYNDPVMNWSGLR*
PicMicro_100082164	F010477	N/A	MKLRYAIFVPYLIFIGMMGGNVLVDALVIGLALAMYDFFFSNGGGGRPA*