Scaffold PicMicro

Basic Information
Taxon OID	3300003702 Open in IMG/M
Scaffold ID	PicMicro_10004499 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003702 Open in IMG/M

Scaffold ID

PicMicro_10004499 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18886
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (47.83%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18886

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (47.83%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	18.55	Long. (^o)	81.716667	Alt. (m)	Depth (m)	5000
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

18.55

Long. (^o)

81.716667

Alt. (m)

Depth (m)

5000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F015147	Metagenome / Metatranscriptome	257	Y
F017148	Metagenome / Metatranscriptome	242	Y
F024125	Metagenome / Metatranscriptome	207	N
F025853	Metagenome / Metatranscriptome	200	Y
F057669	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1000449910	F017148	GGAGG	VFLRPKYLKKNLDILAGCAILFSVMRDRMKNQHIDWLNAQDDRVIAPVEGTHDGYRVVKAMRVSDLACDVAHAQDDFASPVDEDCGWFGYEGLCED*
PicMicro_1000449917	F007550	N/A	MVKKMKYGNQNYYSAELEIVPVKQKVLPNGNAYGLESGIYFKLTDLEPFIMYKLQYSEDLKNWTDMVHLGTYKIAMTSPYYTWKELPKDKCFFRIVVAW*
PicMicro_1000449921	F015147	N/A	MREKIQKLNDILDDFGLYELNAWLWITGGAALTAAILVLLTGEGPEVYRYWRVFFLNL*
PicMicro_1000449927	F024125	GAG	MILAVMKEKIYEKTLDRFTGKVLTCDQCSAEDSKENEVREWGNPYDFGTICEDCDRHET*
PicMicro_1000449929	F025853	GAG	MKKFLINYIPAVHEGQVNSDNKAYFYRVEIDEQFANRSENDKSAGLAAKDTESGLWKRFRFDGIQSAVAI*
PicMicro_1000449933	F057669	GGAG	MTLAQNANMSTRITPSEHWNGFTFEFSNGWSVSIQQGKDHYCERGKTAEVAVFDPEENWYVYDEDSETLEASDVDTYVNGWLDADAVAKIISIISQKKVKKEEYWLDKQTSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicMicro_10004499

Overview

Ecosystem & Geography

Associated Families

Sequences