Scaffold PicMicro_10000936

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10000936
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65998
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (63.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001493	Metagenome	683	Y
F001930	Metagenome	615	Y
F005464	Metagenome / Metatranscriptome	400	Y
F013649	Metagenome	269	Y
F020372	Metagenome / Metatranscriptome	224	Y
F024888	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_100009361	F001930	GAG	MTMKTFKGYLKEVAWEQSASQMIFDFNQIQFMQIPLTSKTMEWIFKVQLPRATVFHVTSSVGLGQLKRLQNKRKSISAFFNMDASTIESGIQGGGGVVAELDANIILSSKNDVMSMPDKTGRRWVELMNIDKKKTMHTELEQLLIDIAIKHDPKTKELIKIETKELIKIEPDIGLGAWWHLRTTFKDDGKKMALIIADYIDGVNTILEKHKKDIQGAVHGYYVRRGAVKVKHPSGRMVGGDSEIKEWNMYDEQVVDKIKIEKVHTFYSQSYADRPKKEIVPHLGKIPHKHWNNARELSTYISQVAEAEIRSMGRSKG*
PicMicro_10000936115	F000615	GAG	MCRIRTFYECSDGTMGWTEMVVSYEEDIAGLIKHLGTGGRMVITEHVDLV*
PicMicro_100009362	F001493	AGAAG	MRTFKQYLKERTPAWTESLSTMLFDLPREGLRDLKIPLSSPIFKRIWPESIRSKVFHLTDYDGVGKLKKMQGKKKSISAFYNMDDIIIASGIKTEGGYVVELEGDVLAASPDDISSQPDKTGRRWLTWSTLLDPIHSNGMGGGSKLKKMEQDLQDLLVEILAKNEMGPYKKGLTPHELNKAWIYLGKSTGGKEKSVIIKDYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGERAMWDELVVNNFKIQKIHVGPEFADDFRDDDDIEGFPFEVYDDVGSMVDYIARTVLDIKI*
PicMicro_1000093656	F005464	AGGA	MNIKSKDMHLRVAGWALSLLCMSIGTYFLWPHIHVALLGIVFFYLGIRIFNFSTFEEYKEERMKLLLKLSKW*
PicMicro_1000093663	F020372	N/A	MENKATIRIYIDGKEMLYSHQNIVVAINSFLPYLTNDDLDELMETFATLNEIRKKQENLAMLETKKH*
PicMicro_1000093685	F024888	N/A	MSKYKNAKIKIDLKNVYKMVSDEVEARIKIDSKGKTPDEWAQFKGFENWLGYAAWSRHTGGFYEMAVQMLKAVWKEQDPEEFARQKKIQSDQSLREHSYINLPPEAWPTSVPNKNDFASNFIGNKKKKWQGVHKSNFTAEQLEKVYDDFGVGGEPVEYRW*
PicMicro_1000093695	F013649	N/A	MSIILDRLSILERLPSHQRMVAHDNAGKKSKKSNKKKHYDEHFNKDWDKDLWD*