Scaffold PicViral_1006741

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1006741
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3729
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002834	Metagenome	527	Y
F002949	Metagenome	518	Y
F010200	Metagenome / Metatranscriptome	307	Y
F019908	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10067412	F002949	N/A	MKRIKHNDLLPWFTEDHGQLPASYLKSTKKFFDELQAPSVKLQAPSVKFLPQLNVKKK*
PicViral_10067416	F002834	AGG	MFYITYFATKHKKFITRKGQYDKPDGTKGKSFTSKNDTPCLVYWDLDADGWRMAVGNAKVKI*
PicViral_10067417	F010200	AGG	MIIPNLFVYIGLGLFALGFLLFIVSIIMERHYEEKLWELREREKWKD*
PicViral_10067419	F019908	AGGA	MKPKKKMQYHVYVWDADADNTETVFEAPAKPTLEQMYKLIGCDRVERVSGYDKSVSNRTFHIWIDEEGKFNNPTKNLRATNAWYRWMQR