Scaffold PicViral_1006695

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1006695
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4432
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F015147	Metagenome / Metatranscriptome	257	Y
F047110	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10066956	F015147	N/A	MRKTTKKIKWLVNDLGLNELDAWLWMTGGAALTAAVLVLLSGGGAEIFRYWRVAALNF*
PicViral_10066957	F047110	N/A	MNTVISINWKIRDLIREKLSFANWHKTVFGRPASRKVLSEIKAKGEELEQMKKDVILAAMDEAAA*
PicViral_10066958	F011494	N/A	MRKYSVVNEEGVVEEFVQLVGEADHAALNDAIELAGRAGEDVVEHFADGSRVVVWELAGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW*