Scaffold PicViral_1006352

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1006352
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4120
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037679	Metagenome	167	Y
F050666	Metagenome	145	Y
F079940	Metagenome	115	Y
F084093	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100635212	F050666	GAG	LKLNEIVNTLLAHALGPEKSEVSGSWSVCIPADGNVQRYATTSLVQAESMLNDWLLAGWPAWIEDNDGNLIHSIGTKPYSVN*
PicViral_10063522	F084093	AGG	MKPQVGDIVQVKEEHMAHCGLHMGLVTRLIKWPEDARHLIDCVVLQDPNHGYPVQLHTRFVEVISRA*
PicViral_10063526	F037679	GGAG	MANRPTKQRMKLGKTSSKRVERTTRGFGQKLHSRPMPAHIHFRAYTPEGELCGVAQRNDTFMVALFDSNERALCPPVVFTGAQARSQAATLASTLTGQKVSF*
PicViral_10063527	F079940	AGGAG	MTTQITELAIISLAFGVSLGYLVGIIKHLADNGWRFDEWV*