Scaffold PicViral_1006265

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1006265
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5016
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062676	Metagenome / Metatranscriptome	130	N
F070005	Metagenome	123	Y
F081425	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10062651	F062676	N/A	MKVKGKRIINSGDALEFANSIRGQYIISQALTIANGVLETYEVDENVIRAEPSNRADMEFLLKAFPLYKIHEVAIWKEDNDEESE*
PicViral_100626510	F081425	GAG	MVTYETMYPTVSPVEDKIKLLLVMRGYDRNKIAFRNDVYNRELRYGYWEFVKTKDIEYVETFSGVKFEPFSTEDDDCGPLISYPFKEIKNAKSRHSAD*
PicViral_10062652	F070005	AGGA	MKKANKHIEPQRYRLNNISVKEIKDKYPDKIVDAYAESGRLVLVLDTCRIKFDERINQKVENRYGAIHTGKLVESS*