Scaffold PicViral

Basic Information
Taxon OID	3300003690 Open in IMG/M
Scaffold ID	PicViral_1005834 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3851
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3851

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	53.0	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

53.0

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F006447	Metagenome / Metatranscriptome	373	Y
F009425	Metagenome / Metatranscriptome	318	Y
F037944	Metagenome / Metatranscriptome	167	Y
F043620	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10058343	F009425	GGA	MRTRNDRSRDVDYHWREVSCKEIGCVNYATGWKTILPADDIANIELIRRSGMGFREEREDGLFVFVFTPGQECFTGQGGGHKVAVERDAILKKDNRIMEHLEFMDNWNDHLYRRSING*
PicViral_10058345	F043620	GGA	MRLIALVSLAGMLTIIGSGLMLGWLYEGPRRLVRIAACYIGFHGPETWGVNPVNQNSEPRCQECQRFLAKVY*
PicViral_10058346	F037944	GGCGG	MTRRMGNRLNNGIDRDGFTLGLSLDWTYVFLGICGLGFAGLVFVAGLAYGIGVLCDS*
PicViral_10058348	F006447	GGA	MTLFEKICRMVGDRRIPSPKMPAFRWFTVGFANKHVTTVVVLAIVVSGLAVAVGLYFAVKDVMSSTYNWPEPAEYQVTEAGLQTMGKKNEDYPDGTESQTLSIRLGNGSRISTLRIKDVDLGRTGISRALDISPLTNAVTGATAYLWVGNLTITNSSFPTFKMETSEVANLTTGLLCDGHTLAATISNTVSDVVLESERLSSVYEVDGSIVDRIQIHITGNSGAFVENLILDNVDAWAGEAYLSRMKIGTATMNNSNLVGDGSGVDSASCSYEASVLARNITNTIQDRPIKVQ*
PicViral_10058349	F003481	N/A	MDDIQEELRLAREELARLKTPEDKSDKIQMTSSDIVRLTIAAPVVFVWLFLGSRIIISATTSQTVLEHIEPLLLALSILTIPVTAILSSLFRVDGNGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicViral_1005834

Overview

Ecosystem & Geography

Associated Families

Sequences