Scaffold PicViral_1005752

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1005752
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5643
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018619	Metagenome	234	Y
F047907	Metagenome	149	Y
F065679	Metagenome	127	Y
F083250	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100575213	F065679	AGGAG	MLKETDGEMRRLGAYHTGIETKVGGVRMPVWKHEAAAAVFAKQGLTFSEGVERLIDTQLIRDR*
PicViral_100575216	F047907	GGAGG	MTVVQCPVPGTYLVRNETEPIPFGQTESSFSVVVHHYERFGWVCERCGYSVRSTRSDCKHIEAAKASRS*
PicViral_10057522	F018619	GGA	MVTSAILNAQIKANEDVLSTHAHNDDPGNGSATLSGVSLSGLDVLVLAAPGGSPSTAGQLRRVGNNLEYYGAALVGLYADAAAATASLRTLGTGSTQAAAGNHTH*
PicViral_10057523	F083250	AGGAGG	MAWTAPRNWSDISNDIVTAAMLNVDVRDNLNVLSTHTHTGSAGQGGASMSGLTLTALVNLTFNDTGAPNAAGEL*