Scaffold PicViral_1005516

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1005516
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3561
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F038425	Metagenome	166	Y
F061287	Metagenome	132	Y
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100551610	F038425	AGGAG	MRDGEKSDIHCPKCDKKLWWWGYASDSLDKQSADIGLGCENSKCKGHEVLPEDVYDAIVIEEERLDG*
PicViral_100551611	F075333	AGGAG	MKKNSVRYLEGLVERGVRMNLSALKHFRYRERGIDSIVKKVIPVDIDNAIASNLSYYLRKYANSYFGQIL*
PicViral_10055162	F021867	GAGG	MENNENVDWDKVNRGKVRYGFALELYKKGEILKPTTMGKIEGFVQYVMDGPDYDTTDEGKPDKSNPKLMPKEECKKVINEESEGSKAFVKAMVHIDAEGLKDNDLEKVLQALKTGKITMDNLQASLDKIQQIKKTYR*
PicViral_10055168	F061287	AGGAG	MYKNDREIMIEELMKLKLQRKLLDEMSDGEIRRLFSILKRYVK*