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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003690 Open in IMG/M |
| Scaffold ID | PicViral_1005365 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3943 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
| Coordinates | Lat. (o) | 53.0 | Long. (o) | Alt. (m) | Depth (m) | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004908 | Metagenome / Metatranscriptome | 419 | Y |
| F011291 | Metagenome / Metatranscriptome | 292 | Y |
| F025764 | Metagenome | 200 | Y |
| F064626 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| PicViral_10053651 | F025764 | GGA | VEKITSVKDLININHNMASVSYGGLAGMLVATVKWAGKSIKEDQTAYALELLERATVEIRKVDNVVERYNRRFNH* |
| PicViral_10053655 | F064626 | N/A | MKELRKVTEKIKKVLINAERGNEEFPWIVDKLSLIKMYEMGLPIHMVLGLIDEFVEDVEERKRIKALEGFDEEHVRKVYDKVNIKWNDRNIN* |
| PicViral_10053656 | F004908 | AGG | MERQEHQLTKKIIDLHQVDDGAINPKTGLTEKPSWYIRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKATTERGGDARFWVVVFQDYEVRLQTKAQIMDVVMEGHRHREDDDNAKFERRNGNEEHFTLE* |
| PicViral_10053658 | F011291 | GGA | MDKYEINVWKDAELLSKEVVEFKSNEECYKYVTDKYHAPGTWTGSHQNKEGVTLNRPPLGIRITWSKRGNTHYKPRKLTSEEKKLQRELYDSITLETIQELGPNEMLAKVRKDYYGSPNAKGMEDKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |