Scaffold PicViral_1005191

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1005191
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4026
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035959	Metagenome / Metatranscriptome	171	Y
F035969	Metagenome / Metatranscriptome	171	Y
F088725	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10051911	F035969	AGGA	MATRHTYATADDLRDYLAGTSYSSGWTSDAGSIRRILEAVSRRIDDYCGGGTFGPLTETRHYD
PicViral_10051912	F035959	GGAGG	MAQAESLVNVTFGATGEVYEMGEVYDVPDATLKRYPDYFRKKAGRPKNKQAPTEDNK*
PicViral_10051916	F088725	N/A	ALRRIPSSIFEVAEGQEAAPVAVDAAPIEQAHPILTAIKAPRVAPRGQILRRRMIEEREEETDDLAAKTLRHFRGIRNRVDGILGRHMERQTAETKEYPFEVSDMLPPIETGNMEKILAAAYRRVSKRTFKTINDVGVAGTLDWSDKLPTVQRVLTQAPTRAAMIHRTTSKAIGRAVGIGLERGYSIEQLARGVPDDRFPGIRSILGETENRARLIARTEVMRTQNQTTTGFYKEQGFAYVQADDVDGDPDDNYIDPGDPYGRTCAERHGQIYTLEDAQNIDDHPNGTLNWMPMPRGYKPEGAI*